Index

_

__bool__() (seisflows.tools.config.Null method) __call__() (seisflows.seisflows.SeisFlows method) (seisflows.tools.config.Null method) __delattr__() (seisflows.tools.config.Null method) __doc__ (seisflows.optimize.LBFGS.LBFGS attribute) (seisflows.optimize.NLCG.NLCG attribute) (seisflows.solver.specfem2d.Specfem2D attribute) (seisflows.solver.specfem3d.Specfem3D attribute) (seisflows.solver.specfem3d_globe.Specfem3DGlobe attribute) (seisflows.system.chinook.Chinook attribute) (seisflows.system.cluster.Cluster attribute) (seisflows.system.fujitsu.Fujitsu attribute) (seisflows.system.maui.Maui attribute) (seisflows.system.singularity.Singularity attribute) (seisflows.system.slurm.Slurm attribute) (seisflows.system.wisteria.Wisteria attribute) (seisflows.workflow.inversion.Inversion attribute) (seisflows.workflow.migration.Migration attribute) (seisflows.workflow.noise_inversion.NoiseInversion attribute) __getattr__() (seisflows.tools.config.Dict method) (seisflows.tools.config.Null method) __nonzero__() (seisflows.tools.config.Null method) __path__ (in module seisflows) (in module seisflows.optimize) (in module seisflows.plugins) (in module seisflows.preprocess) (in module seisflows.solver) (in module seisflows.system) (in module seisflows.workflow) __repr__() (seisflows.tools.config.Dict method) __setattr__() (seisflows.tools.config.Dict method) (seisflows.tools.config.Null method) __str__() (seisflows.optimize.gradient.Gradient method) (seisflows.plugins.line_search.Bracket method) (seisflows.plugins.line_search.bracket.Bracket method) (seisflows.tools.config.Dict method) __version__ (in module seisflows) _absorb_wildcard (seisflows.solver.specfem.Specfem attribute) (seisflows.solver.specfem3d.Specfem3D attribute) (seisflows.solver.specfem3d_globe.Specfem3DGlobe attribute) _acceptable_adjsrcs (seisflows.preprocess.default.Default attribute) _acceptable_filters (seisflows.preprocess.default.Default attribute) _acceptable_fix_windows (seisflows.preprocess.pyaflowa.Pyaflowa attribute) _acceptable_log_levels (seisflows.system.workstation.Workstation attribute) _acceptable_misfits (seisflows.preprocess.default.Default attribute) _acceptable_mutes (seisflows.preprocess.default.Default attribute) _acceptable_norms (seisflows.preprocess.default.Default attribute) _acceptable_partitions (seisflows.system.frontera.Frontera attribute) _acceptable_preconditioners (seisflows.optimize.gradient.Gradient attribute) _acceptable_smooth_types (seisflows.solver.specfem3d_globe.Specfem3DGlobe attribute) _acceptable_source_prefixes (seisflows.preprocess.pyaflowa.Pyaflowa attribute) (seisflows.solver.specfem.Specfem attribute) (seisflows.solver.specfem3d.Specfem3D attribute) (seisflows.solver.specfem3d_globe.Specfem3DGlobe attribute) _acceptable_unit_output (seisflows.preprocess.default.Default attribute) _acceptable_vectors (seisflows.optimize.gradient.Gradient attribute) _adj_simulation_executables (seisflows.solver.specfem.Specfem attribute) (seisflows.solver.specfem3d.Specfem3D attribute) (seisflows.solver.specfem3d_globe.Specfem3DGlobe attribute) _apply_inverse_hessian() (seisflows.optimize.LBFGS.LBFGS method) _args (seisflows.seisflows.SeisFlows attribute) _available_clusters (seisflows.system.maui.Maui attribute) _available_materials (seisflows.solver.specfem.Specfem attribute) (seisflows.solver.specfem2d.Specfem2D attribute) (seisflows.solver.specfem3d.Specfem3D attribute) (seisflows.solver.specfem3d_globe.Specfem3DGlobe attribute) _available_model_types (seisflows.solver.specfem.Specfem attribute) _calc_beta (seisflows.optimize.NLCG.NLCG attribute) _calculate_misfit() (seisflows.preprocess.default.Default method) _check_2d3d_parameters() (seisflows.tools.model.Model method) _check_3dglobe_parameters() (seisflows.tools.model.Model method) _check_bracket() (in module seisflows.plugins.line_search.bracket) _check_fixed_windows() (seisflows.preprocess.pyaflowa.Pyaflowa method) _check_job_status() (seisflows.system.lsf.Lsf method) _check_mpi_executable() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method) (seisflows.examples.sfexample2d.SFExample2D method) _check_status() (seisflows.optimize.LBFGS.LBFGS method) _cmpnt (seisflows.workflow.noise_inversion.NoiseInversion attribute) _completed_states (seisflows.system.cluster.Cluster attribute) (seisflows.system.fujitsu.Fujitsu attribute) (seisflows.system.slurm.Slurm attribute) _conda_activate (seisflows.system.frontera.Frontera attribute) _config (seisflows.preprocess.pyaflowa.Pyaflowa attribute) _config_auxiliary_logger() (seisflows.preprocess.pyaflowa.Pyaflowa method) _data_case (seisflows.preprocess.pyaflowa.Pyaflowa attribute) _exc2log() (seisflows.solver.specfem.Specfem static method) _export_starting_models() (seisflows.solver.specfem.Specfem method) _export_vtk (seisflows.solver.specfem.Specfem attribute) (seisflows.solver.specfem3d.Specfem3D attribute) (seisflows.solver.specfem3d_globe.Specfem3DGlobe attribute) _ext (seisflows.solver.specfem.Specfem attribute) _f0 (seisflows.solver.specfem2d.Specfem2D attribute) _failed_states (seisflows.system.cluster.Cluster attribute) (seisflows.system.fujitsu.Fujitsu attribute) (seisflows.system.slurm.Slurm attribute) _finalize_logging() (seisflows.preprocess.pyaflowa.Pyaflowa method) _fix_windows (seisflows.preprocess.pyaflowa.Pyaflowa attribute) _fletcher_reeves() (seisflows.optimize.NLCG.NLCG method) _force (seisflows.workflow.noise_inversion.NoiseInversion attribute) _forward_array_wildcard (seisflows.solver.specfem.Specfem attribute) (seisflows.solver.specfem3d.Specfem3D attribute) (seisflows.solver.specfem3d_globe.Specfem3DGlobe attribute) _fwd_arr_dir (seisflows.workflow.noise_inversion.NoiseInversion attribute) _fwd_simulation_executables (seisflows.solver.specfem.Specfem attribute) (seisflows.solver.specfem3d.Specfem3D attribute) (seisflows.solver.specfem3d_globe.Specfem3DGlobe attribute) _gabor() (in module seisflows.plugins.preprocess.wavelets) _gauss() (in module seisflows.plugins.preprocess.wavelets) _generate_adjsrc() (seisflows.preprocess.default.Default method) _generate_empty_adjsrcs() (seisflows.workflow.noise_inversion.NoiseInversion method) _generate_synthetic_data_single() (seisflows.workflow.forward.Forward method) (seisflows.workflow.noise_inversion.NoiseInversion method) _get_log_file() (seisflows.system.workstation.Workstation method) _get_nproc_parameters() (seisflows.tools.model.Model method)

_getidx_vel_model() (in module seisflows.tools.specfem) _good_enough() (in module seisflows.plugins.line_search.bracket) _guess_file_format() (seisflows.tools.model.Model method) _guess_specfem_flavor() (seisflows.tools.model.Model method) _initialize_working_directories() (seisflows.solver.specfem.Specfem method) _initialize_working_directory() (seisflows.solver.specfem.Specfem method) _inspect_class_that_defined_method() (seisflows.seisflows.SeisFlows method) _inspect_module_hierarchy() (seisflows.seisflows.SeisFlows method) _instantiate_manager() (seisflows.preprocess.pyaflowa.Pyaflowa method) _inv (seisflows.preprocess.pyaflowa.Pyaflowa attribute) _iterable() (in module seisflows.tools.unix) _iteration (seisflows.preprocess.default.Default attribute) _job_id_list() (seisflows.system.lsf.Lsf method) _kernel_databases (seisflows.solver.specfem3d_globe.Specfem3DGlobe attribute) _LBFGS_iter (seisflows.optimize.LBFGS.LBFGS attribute) _line_search (seisflows.optimize.gradient.Gradient attribute) _max_jobs (seisflows.system.frontera.Frontera attribute) _memory_used (seisflows.optimize.LBFGS.LBFGS attribute) _model_databases (seisflows.solver.specfem3d.Specfem3D attribute) (seisflows.solver.specfem3d_globe.Specfem3DGlobe attribute) _modify_run_call_single_proc() (in module seisflows.system.lsf) _modules (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D attribute) (seisflows.examples.ex2_hh_w_pyatoa.SFPyatoaEx2D attribute) (seisflows.examples.ex3_fwd_solver.SFFwdEx2D attribute) (seisflows.examples.sfexample2d.SFExample2D attribute) (seisflows.workflow.forward.Forward attribute) (seisflows.workflow.test_flow.TestFlow attribute) _mpiexec (seisflows.solver.specfem.Specfem attribute) _ngll (seisflows.tools.model.Model attribute) _NLCG_iter (seisflows.optimize.NLCG.NLCG attribute) _nproc (seisflows.preprocess.pyaflowa.Pyaflowa attribute) (seisflows.tools.model.Model attribute) _ntask (seisflows.preprocess.pyaflowa.Pyaflowa attribute) _obs_acceptable_data_formats (seisflows.preprocess.default.Default attribute) _optimize_name (seisflows.workflow.inversion.Inversion attribute) _optional_modules (seisflows.workflow.forward.Forward attribute) _parameters (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D attribute) (seisflows.examples.sfexample2d.SFExample2D attribute) (seisflows.seisflows.SeisFlows attribute) (seisflows.solver.specfem.Specfem attribute) (seisflows.solver.specfem3d_globe.Specfem3DGlobe attribute) (seisflows.tools.model.Model attribute) _partitions (seisflows.system.chinook.Chinook attribute) (seisflows.system.frontera.Frontera attribute) (seisflows.system.maui.Maui attribute) (seisflows.system.slurm.Slurm attribute) _paths (seisflows.seisflows.SeisFlows attribute) _pending_states (seisflows.system.cluster.Cluster attribute) (seisflows.system.fujitsu.Fujitsu attribute) (seisflows.system.slurm.Slurm attribute) _pollak_ribere() (seisflows.optimize.NLCG.NLCG method) _precondition() (seisflows.optimize.gradient.Gradient method) _print_examples() (seisflows.seisflows.SeisFlows static method) _print_inheritance() (seisflows.seisflows.SeisFlows method) _print_modules() (seisflows.seisflows.SeisFlows method) _print_source_names() (seisflows.seisflows.SeisFlows method) _print_tasks() (seisflows.seisflows.SeisFlows method) _public_methods (seisflows.seisflows.SeisFlows property) _quantify_misfit_single() (seisflows.preprocess.default.Default method) (seisflows.preprocess.pyaflowa.Pyaflowa method) _query() (seisflows.system.lsf.Lsf method) _read_model_adios() (seisflows.tools.model.Model method) _read_model_ascii() (seisflows.tools.model.Model method) _read_model_fortran_binary() (seisflows.tools.model.Model method) _regions (seisflows.solver.specfem.Specfem attribute) (seisflows.solver.specfem3d_globe.Specfem3DGlobe attribute) _rename_kernel_parameters() (seisflows.solver.specfem.Specfem method) _rename_preprocess_files() (seisflows.workflow.noise_inversion.NoiseInversion method) _required_binaries (seisflows.solver.specfem.Specfem attribute) (seisflows.solver.specfem3d.Specfem3D attribute) (seisflows.solver.specfem3d_globe.Specfem3DGlobe attribute) _required_modules (seisflows.workflow.forward.Forward attribute) (seisflows.workflow.inversion.Inversion attribute) (seisflows.workflow.migration.Migration attribute) _restart_line_search() (seisflows.plugins.line_search.Bracket method) (seisflows.plugins.line_search.bracket.Bracket method) (seisflows.seisflows.SeisFlows method) _restarted (seisflows.optimize.gradient.Gradient attribute) _revert_search_history() (seisflows.plugins.line_search.Bracket method) (seisflows.plugins.line_search.bracket.Bracket method) _rotate_ne_trace_to_rt_single() (seisflows.workflow.noise_inversion.NoiseInversion method) _rotate_rt_adjsrc_to_ne_single() (seisflows.workflow.noise_inversion.NoiseInversion method) _rscgrps (seisflows.system.fujitsu.Fujitsu attribute) (seisflows.system.wisteria.Wisteria attribute) _run_adjoint_simulation_single() (seisflows.workflow.inversion.Inversion method) (seisflows.workflow.migration.Migration method) (seisflows.workflow.noise_inversion.NoiseInversion method) _run_binary() (seisflows.solver.specfem.Specfem method) _run_rt_adjoint_simulations_combined() (seisflows.workflow.noise_inversion.NoiseInversion method) _run_rt_adjoint_simulations_separate() (seisflows.workflow.noise_inversion.NoiseInversion method) _run_task() (seisflows.system.cluster.Cluster method) _setup_quantify_misfit() (seisflows.preprocess.default.Default method) (seisflows.preprocess.pyaflowa.Pyaflowa method) _source_names (seisflows.solver.specfem.Specfem attribute) _source_prefix (seisflows.preprocess.pyaflowa.Pyaflowa attribute) _srcrcv_stats (seisflows.workflow.noise_inversion.NoiseInversion attribute) _ssh_call (seisflows.system.frontera.Frontera attribute) _start (seisflows.preprocess.pyaflowa.Pyaflowa attribute) _states (seisflows.workflow.forward.Forward attribute) _stdout_to_job_id() (seisflows.system.frontera.Frontera static method) (seisflows.system.fujitsu.Fujitsu static method) (seisflows.system.slurm.Slurm static method) _step_count (seisflows.preprocess.default.Default attribute) _syn_acceptable_data_formats (seisflows.preprocess.default.Default attribute) (seisflows.preprocess.pyaflowa.Pyaflowa attribute) _syn_available_data_formats (seisflows.solver.specfem.Specfem attribute) (seisflows.solver.specfem3d_globe.Specfem3DGlobe attribute) _test_function_a() (in module seisflows.tests.test_system) _test_function_b() (in module seisflows.tests.test_system) _test_inversion_optimization_problem_general() (in module seisflows.tests.test_optimize) _update_ngll_from_model() (seisflows.tools.model.Model method) _update_search_history() (seisflows.optimize.LBFGS.LBFGS method) _was_thrifty (seisflows.workflow.inversion.Inversion attribute) _write_adjsrc_single() (in module seisflows.preprocess.default) _write_model_fortran_binary() (seisflows.tools.model.Model method)

A

acceleration() (in module seisflows.plugins.preprocess.adjoint) (in module seisflows.plugins.preprocess.misfit) acceptable_parameters (seisflows.tools.model.Model attribute) account (seisflows.system.maui.Maui attribute) adj_src_type (seisflows.preprocess.pyaflowa.Pyaflowa attribute) adjoint (seisflows.preprocess.default.Default attribute) adjoint_simulation() (seisflows.solver.specfem.Specfem method) (seisflows.solver.specfem3d.Specfem3D method) (seisflows.solver.specfem3d_globe.Specfem3DGlobe method) allocation (seisflows.system.frontera.Frontera attribute) amplitude() (in module seisflows.plugins.preprocess.adjoint) (in module seisflows.plugins.preprocess.misfit)

ancil_cluster (seisflows.system.maui.Maui attribute) ancil_partition (seisflows.system.maui.Maui attribute) ancil_run_call_header (seisflows.system.maui.Maui property) ancil_tasktime (seisflows.system.maui.Maui attribute) angle() (in module seisflows.tools.math) args (in module seisflows.system.runscripts.run_funcs) (in module seisflows.system.runscripts.submit_workflow) array (seisflows.system.workstation.Workstation attribute) ascii_logo (in module seisflows.tools.msg) ascii_logo_small (in module seisflows.tools.msg) attempt_line_search_restart() (seisflows.optimize.gradient.Gradient method) attenuation (seisflows.solver.specfem.Specfem attribute)

B

Backtrack (class in seisflows.plugins.line_search) (class in seisflows.plugins.line_search.backtrack)

base_parameter_file (in module seisflows.tools.msg) Bracket (class in seisflows.plugins.line_search) (class in seisflows.plugins.line_search.bracket)

C

calc_beta (seisflows.optimize.NLCG.NLCG attribute) calculate_step_length() (seisflows.optimize.gradient.Gradient method) (seisflows.plugins.line_search.Backtrack method) (seisflows.plugins.line_search.backtrack.Backtrack method) (seisflows.plugins.line_search.Bracket method) (seisflows.plugins.line_search.bracket.Bracket method) cat() (in module seisflows.tools.unix) cd() (in module seisflows.tools.unix) check() (seisflows.optimize.gradient.Gradient method) (seisflows.plugins.line_search.Bracket method) (seisflows.plugins.line_search.bracket.Bracket method) (seisflows.preprocess.default.Default method) (seisflows.preprocess.pyaflowa.Pyaflowa method) (seisflows.seisflows.SeisFlows method) (seisflows.solver.specfem.Specfem method) (seisflows.solver.specfem3d.Specfem3D method) (seisflows.solver.specfem3d_globe.Specfem3DGlobe method) (seisflows.system.frontera.Frontera method) (seisflows.system.fujitsu.Fujitsu method) (seisflows.system.maui.Maui method) (seisflows.system.slurm.Slurm method) (seisflows.system.workstation.Workstation method) (seisflows.tools.model.Model method) (seisflows.workflow.forward.Forward method) (seisflows.workflow.inversion.Inversion method) (seisflows.workflow.noise_inversion.NoiseInversion method) (seisflows.workflow.test_flow.TestFlow method) check_conjugacy() (in module seisflows.optimize.NLCG) check_descent() (in module seisflows.optimize.NLCG) check_model_values() (seisflows.solver.specfem.Specfem method) check_source_names() (in module seisflows.tools.specfem) checkpoint() (seisflows.optimize.gradient.Gradient method) (seisflows.optimize.LBFGS.LBFGS method) (seisflows.optimize.NLCG.NLCG method) (seisflows.system.lsf.Lsf method) (seisflows.workflow.forward.Forward method) (seisflows.workflow.inversion.Inversion method)

Chinook (class in seisflows.system.chinook) clean() (seisflows.seisflows.SeisFlows method) cleanup_xspecfem2d_run() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method) (seisflows.examples.sfexample2d.SFExample2D method) clear_search_history() (seisflows.plugins.line_search.Bracket method) (seisflows.plugins.line_search.bracket.Bracket method) cli() (in module seisflows.tools.msg) Cluster (class in seisflows.system.cluster) cluster (seisflows.system.maui.Maui attribute) combine() (seisflows.solver.specfem.Specfem method) (seisflows.solver.specfem3d_globe.Specfem3DGlobe method) combine_vol_data_vtk() (seisflows.solver.specfem3d.Specfem3D method) (seisflows.solver.specfem3d_globe.Specfem3DGlobe method) components (seisflows.solver.specfem.Specfem attribute) compute_direction() (seisflows.optimize.gradient.Gradient method) (seisflows.optimize.LBFGS.LBFGS method) (seisflows.optimize.NLCG.NLCG method) compute_trial_model() (seisflows.optimize.gradient.Gradient method) conda_env (seisflows.system.frontera.Frontera attribute) config_logger() (in module seisflows.tools.config) configure() (seisflows.seisflows.SeisFlows method) configure_specfem2d() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method) (seisflows.examples.sfexample2d.SFExample2D method) convert_stations_to_sources() (in module seisflows.tools.specfem) coordinates (seisflows.tools.model.Model attribute) copy() (seisflows.tools.model.Model method) copy_file() (in module seisflows.tools.config) cp() (in module seisflows.tools.unix) cpus_per_task (seisflows.system.maui.Maui attribute) create_specfem2d_working_directory() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method) (seisflows.examples.sfexample2d.SFExample2D method) custom_import() (in module seisflows.tools.config) cwd (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D attribute) (seisflows.examples.sfexample2d.SFExample2D attribute) (seisflows.solver.specfem.Specfem property)

D

data_filenames() (seisflows.solver.specfem.Specfem method) data_wildcard() (seisflows.solver.specfem.Specfem method) (seisflows.solver.specfem3d.Specfem3D method) (seisflows.solver.specfem3d_globe.Specfem3DGlobe method) debug() (seisflows.seisflows.SeisFlows method) Default (class in seisflows.preprocess.default) define_dir_structures() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D static method) (seisflows.examples.sfexample2d.SFExample2D static method)

DEG (in module seisflows.tools.msg) Dict (class in seisflows.tools.config) displacement() (in module seisflows.plugins.preprocess.adjoint) (in module seisflows.plugins.preprocess.misfit) dot() (in module seisflows.tools.math) download_specfem2d() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method) (seisflows.examples.sfexample2d.SFExample2D method)

E

early_const (seisflows.preprocess.default.Default attribute) early_slope (seisflows.preprocess.default.Default attribute) end (seisflows.workflow.inversion.Inversion attribute) ENV_VARIABLES (in module seisflows.tools.config) envelope() (in module seisflows.plugins.preprocess.adjoint) (in module seisflows.plugins.preprocess.misfit) envelope2() (in module seisflows.plugins.preprocess.adjoint) (in module seisflows.plugins.preprocess.misfit) envelope3() (in module seisflows.plugins.preprocess.adjoint) (in module seisflows.plugins.preprocess.misfit) environs (seisflows.system.cluster.Cluster attribute) (seisflows.system.singularity.Singularity attribute) evaluate_gradient_from_kernels() (seisflows.workflow.inversion.Inversion method) (seisflows.workflow.migration.Migration method) evaluate_initial_misfit() (seisflows.workflow.forward.Forward method) (seisflows.workflow.inversion.Inversion method) evaluate_line_search_misfit() (seisflows.workflow.inversion.Inversion method) (seisflows.workflow.noise_inversion.NoiseInversion method)

evaluate_objective_function() (seisflows.workflow.forward.Forward method) (seisflows.workflow.inversion.Inversion method) (seisflows.workflow.noise_inversion.NoiseInversion method) evaluate_rt_misfit() (seisflows.workflow.noise_inversion.NoiseInversion method) evaluate_zz_misfit() (seisflows.workflow.noise_inversion.NoiseInversion method) evaluation (seisflows.workflow.inversion.Inversion property) examples() (seisflows.seisflows.SeisFlows method) export() (in module seisflows.system.runscripts.run_funcs) export_datasets (seisflows.preprocess.pyaflowa.Pyaflowa attribute) export_figures (seisflows.preprocess.pyaflowa.Pyaflowa attribute) export_gradient (seisflows.workflow.migration.Migration attribute) export_kernels (seisflows.workflow.migration.Migration attribute) export_log_files (seisflows.preprocess.pyaflowa.Pyaflowa attribute) export_model (seisflows.workflow.inversion.Inversion attribute) export_residuals (seisflows.workflow.forward.Forward attribute) export_traces (seisflows.workflow.forward.Forward attribute) export_vtk (seisflows.solver.specfem3d.Specfem3D attribute) (seisflows.solver.specfem3d_globe.Specfem3DGlobe attribute)

F

filter (seisflows.preprocess.default.Default attribute) filter() (in module seisflows.tools.signal) finalize() (seisflows.preprocess.default.Default method) (seisflows.preprocess.pyaflowa.Pyaflowa method) (seisflows.solver.specfem.Specfem method) (seisflows.system.workstation.Workstation method) finalize_iteration() (seisflows.workflow.forward.Forward method) (seisflows.workflow.inversion.Inversion method) finalize_search() (seisflows.optimize.gradient.Gradient method) finalize_specfem2d_par_file() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method) (seisflows.examples.sfexample2d.SFExample2D method) fix_windows (seisflows.preprocess.pyaflowa.Pyaflowa attribute)

flavor (seisflows.tools.model.Model attribute) fmt (seisflows.tools.model.Model attribute) fnfmt() (seisflows.tools.model.Model method) Forward (class in seisflows.workflow.forward) forward_simulation() (seisflows.solver.specfem.Specfem method) (seisflows.solver.specfem3d.Specfem3D method) Frontera (class in seisflows.system.frontera) ftag() (seisflows.preprocess.pyaflowa.Pyaflowa static method) Fujitsu (class in seisflows.system.fujitsu) func_vals (seisflows.plugins.line_search.Bracket attribute) (seisflows.plugins.line_search.bracket.Bracket attribute) fwd_arr_path (seisflows.workflow.noise_inversion.NoiseInversion property)

G

gabor() (in module seisflows.plugins.preprocess.wavelets) gaussian() (in module seisflows.tools.math) generate_data (seisflows.workflow.forward.Forward attribute) generate_synthetic_data() (seisflows.workflow.forward.Forward method) (seisflows.workflow.inversion.Inversion method) (seisflows.workflow.noise_inversion.NoiseInversion method) get_receiver_coords() (in module seisflows.tools.signal) get_search_history() (seisflows.plugins.line_search.Bracket method) (seisflows.plugins.line_search.bracket.Bracket method) get_source_coords() (in module seisflows.tools.signal) get_source_locations() (in module seisflows.tools.specfem) get_src_rcv_lookup_table() (in module seisflows.tools.specfem) get_station_locations() (in module seisflows.tools.specfem) get_stats() (seisflows.optimize.gradient.Gradient method)

get_task_id() (in module seisflows.tools.config) getpar() (in module seisflows.tools.specfem) getpar_vel_model() (in module seisflows.tools.specfem) gpu (seisflows.system.fujitsu.Fujitsu attribute) (seisflows.system.wisteria.Wisteria attribute) grad() (in module seisflows.tools.math) Gradient (class in seisflows.optimize.gradient) grid2mesh() (in module seisflows.tools.array) gridsmooth() (in module seisflows.tools.array) group (seisflows.system.fujitsu.Fujitsu attribute) (seisflows.system.wisteria.Wisteria attribute) gtg (seisflows.plugins.line_search.Bracket attribute) (seisflows.plugins.line_search.bracket.Bracket attribute) gtp (seisflows.plugins.line_search.Bracket attribute) (seisflows.plugins.line_search.bracket.Bracket attribute)

H

hilbert() (in module seisflows.tools.math)

hostname() (in module seisflows.tools.unix)

I

imgs_to_pdf() (in module seisflows.tools.graphics) import_model() (seisflows.solver.specfem.Specfem method) (seisflows.solver.specfem3d_globe.Specfem3DGlobe method) import_seisflows() (in module seisflows.tools.config) init() (seisflows.seisflows.SeisFlows method) initialize_adjoint_traces() (in module seisflows.preprocess.default) initialize_line_search() (seisflows.plugins.line_search.Bracket method) (seisflows.plugins.line_search.bracket.Bracket method) (seisflows.workflow.inversion.Inversion method)

initialize_search() (seisflows.optimize.gradient.Gradient method) instantaneous_phase() (in module seisflows.plugins.preprocess.adjoint) (in module seisflows.plugins.preprocess.misfit) instantaneous_phase2() (in module seisflows.plugins.preprocess.adjoint) (in module seisflows.plugins.preprocess.misfit) Inversion (class in seisflows.workflow.inversion) is_thrifty (seisflows.workflow.inversion.Inversion property) iteridx (seisflows.plugins.line_search.Bracket attribute) (seisflows.plugins.line_search.bracket.Bracket attribute)

K

kernel_databases (seisflows.solver.specfem.Specfem property) (seisflows.solver.specfem3d.Specfem3D property) (seisflows.solver.specfem3d_globe.Specfem3DGlobe property)

kernels (seisflows.workflow.noise_inversion.NoiseInversion attribute)

L

late_const (seisflows.preprocess.default.Default attribute) late_slope (seisflows.preprocess.default.Default attribute) LBFGS (class in seisflows.optimize.LBFGS) LBFGS_max (seisflows.optimize.LBFGS.LBFGS attribute) LBFGS_mem (seisflows.optimize.LBFGS.LBFGS attribute) LBFGS_thresh (seisflows.optimize.LBFGS.LBFGS attribute) line_search_method (seisflows.optimize.gradient.Gradient attribute) ln() (in module seisflows.tools.unix) load_checkpoint() (seisflows.optimize.gradient.Gradient method) (seisflows.optimize.LBFGS.LBFGS method) load_vector() (seisflows.optimize.gradient.Gradient method) load_yaml() (in module seisflows.tools.config)

log_level (seisflows.system.workstation.Workstation attribute) logger (in module seisflows) (in module seisflows.optimize) (in module seisflows.plugins) (in module seisflows.preprocess) (in module seisflows.solver) (in module seisflows.system) (in module seisflows.workflow) long_dist (seisflows.preprocess.default.Default attribute) ls() (in module seisflows.tools.unix) Lsf (class in seisflows.system.lsf) lsq2() (in module seisflows.tools.math)

M

main() (in module seisflows.seisflows) (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method) (seisflows.examples.ex3_fwd_solver.SFFwdEx2D method) (seisflows.examples.sfexample2d.SFExample2D method) make_output_vtk_files() (seisflows.solver.specfem.Specfem method) make_specfem2d_executables() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method) (seisflows.examples.sfexample2d.SFExample2D method) mask() (in module seisflows.tools.signal) mask_source (seisflows.solver.specfem3d_globe.Specfem3DGlobe attribute) materials (seisflows.solver.specfem.Specfem attribute) Maui (class in seisflows.system.maui) max_freq (seisflows.preprocess.default.Default attribute) max_period (seisflows.preprocess.default.Default attribute) (seisflows.preprocess.pyaflowa.Pyaflowa attribute) merge() (seisflows.tools.model.Model method) merge_pdfs() (in module seisflows.tools.graphics) mesh2grid() (in module seisflows.tools.array) meshsmooth() (in module seisflows.tools.array) Migration (class in seisflows.workflow.migration) min_freq (seisflows.preprocess.default.Default attribute) min_period (seisflows.preprocess.default.Default attribute) (seisflows.preprocess.pyaflowa.Pyaflowa attribute) misfit (seisflows.preprocess.default.Default attribute) mjr() (in module seisflows.tools.msg) mkdir() (in module seisflows.tools.unix) mnr() (in module seisflows.tools.msg) Model (class in seisflows.tools.model) model (seisflows.tools.model.Model attribute) model_databases (seisflows.solver.specfem.Specfem property) (seisflows.solver.specfem3d.Specfem3D property) (seisflows.solver.specfem3d_globe.Specfem3DGlobe property) model_files (seisflows.solver.specfem.Specfem property) model_wildcard() (seisflows.solver.specfem.Specfem method) module seisflows seisflows.examples seisflows.examples.ex1_homogeneous_halfspace seisflows.examples.ex2_hh_w_pyatoa seisflows.examples.ex3_fwd_solver seisflows.examples.sfexample2d seisflows.optimize seisflows.optimize.gradient seisflows.optimize.LBFGS seisflows.optimize.NLCG seisflows.plugins seisflows.plugins.line_search seisflows.plugins.line_search.backtrack seisflows.plugins.line_search.bracket seisflows.plugins.preprocess seisflows.plugins.preprocess.adjoint seisflows.plugins.preprocess.misfit seisflows.plugins.preprocess.wavelets seisflows.preprocess seisflows.preprocess.default seisflows.preprocess.pyaflowa seisflows.seisflows seisflows.solver seisflows.solver.specfem seisflows.solver.specfem2d seisflows.solver.specfem3d seisflows.solver.specfem3d_globe seisflows.system seisflows.system.chinook seisflows.system.cluster seisflows.system.frontera seisflows.system.fujitsu seisflows.system.lsf seisflows.system.maui seisflows.system.runscripts seisflows.system.runscripts.run_funcs seisflows.system.runscripts.submit_workflow seisflows.system.singularity seisflows.system.slurm seisflows.system.wisteria seisflows.system.workstation seisflows.tests seisflows.tests.test_optimize seisflows.tests.test_preprocess seisflows.tests.test_seisflows seisflows.tests.test_solver seisflows.tests.test_system seisflows.tests.test_tools seisflows.tools seisflows.tools.array seisflows.tools.config seisflows.tools.graphics seisflows.tools.math seisflows.tools.model seisflows.tools.msg seisflows.tools.noise seisflows.tools.signal seisflows.tools.specfem seisflows.tools.unix seisflows.workflow seisflows.workflow.forward seisflows.workflow.inversion seisflows.workflow.migration seisflows.workflow.noise_inversion seisflows.workflow.test_flow

monitor_job_status() (seisflows.system.cluster.Cluster method) (seisflows.system.fujitsu.Fujitsu method) mpiexec (seisflows.system.chinook.Chinook attribute) (seisflows.system.cluster.Cluster attribute) (seisflows.system.frontera.Frontera attribute) (seisflows.system.singularity.Singularity attribute) (seisflows.system.workstation.Workstation attribute) multiples (seisflows.solver.specfem2d.Specfem2D attribute) mute (seisflows.preprocess.default.Default attribute) mute() (in module seisflows.tools.signal) mute_arrivals() (in module seisflows.tools.signal) mute_offsets() (in module seisflows.tools.signal) mv() (in module seisflows.tools.unix)

N

nabla() (in module seisflows.tools.math) nabla2() (in module seisflows.tools.math) NAMES (in module seisflows) ngll (seisflows.tools.model.Model property) niter (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D attribute) (seisflows.examples.sfexample2d.SFExample2D attribute) NLCG (class in seisflows.optimize.NLCG) NLCG_max (seisflows.optimize.NLCG.NLCG attribute) NLCG_thresh (seisflows.optimize.NLCG.NLCG attribute) node_size (seisflows.system.fujitsu.Fujitsu property) (seisflows.system.slurm.Slurm property) nodes (seisflows.system.fujitsu.Fujitsu property) (seisflows.system.slurm.Slurm property) NoiseInversion (class in seisflows.workflow.noise_inversion) normalize (seisflows.preprocess.default.Default attribute) normalize() (in module seisflows.tools.signal) nproc (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D attribute) (seisflows.examples.sfexample2d.SFExample2D attribute) (seisflows.solver.specfem.Specfem attribute) (seisflows.system.workstation.Workstation attribute) (seisflows.tools.model.Model property)

nproc() (in module seisflows.tools.unix) nsta (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D attribute) (seisflows.examples.sfexample2d.SFExample2D attribute) ntask (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D attribute) (seisflows.examples.sfexample2d.SFExample2D attribute) (seisflows.solver.specfem.Specfem attribute) (seisflows.system.workstation.Workstation attribute) ntask_max (seisflows.system.cluster.Cluster attribute) (seisflows.system.frontera.Frontera attribute) (seisflows.system.fujitsu.Fujitsu attribute) (seisflows.system.singularity.Singularity attribute) (seisflows.system.slurm.Slurm attribute) Null (class in seisflows.tools.config) number_fid() (in module seisflows.tools.config)

O

obs_data_format (seisflows.preprocess.default.Default attribute) (seisflows.preprocess.pyaflowa.Pyaflowa attribute)

P

par() (seisflows.seisflows.SeisFlows method) par_file() (in module seisflows.tests.test_seisflows) par_file_dict() (in module seisflows.tests.test_seisflows) parabolic_backtrack() (in module seisflows.tools.math) parameters (seisflows.tools.model.Model property) parse_args() (in module seisflows.system.runscripts.run_funcs) (in module seisflows.system.runscripts.submit_workflow) partition (seisflows.system.chinook.Chinook attribute) (seisflows.system.frontera.Frontera attribute) (seisflows.system.maui.Maui attribute) (seisflows.system.slurm.Slurm attribute) path (seisflows.optimize.gradient.Gradient attribute) (seisflows.preprocess.default.Default attribute) (seisflows.preprocess.pyaflowa.Pyaflowa attribute) (seisflows.solver.specfem.Specfem attribute) (seisflows.system.workstation.Workstation attribute) (seisflows.tools.model.Model attribute) (seisflows.workflow.forward.Forward attribute) (seisflows.workflow.test_flow.TestFlow attribute) pickle_function_list() (in module seisflows.tools.config) pjm_args (seisflows.system.fujitsu.Fujitsu attribute) plot2d() (seisflows.seisflows.SeisFlows method) (seisflows.tools.model.Model method) plot_2d_contour() (in module seisflows.tools.graphics) plot_2d_image() (in module seisflows.tools.graphics)

plot_optim_stats() (in module seisflows.tools.graphics) plot_waveforms (seisflows.preprocess.default.Default attribute) (seisflows.preprocess.pyaflowa.Pyaflowa attribute) plot_waveforms() (in module seisflows.tools.graphics) plotst() (seisflows.seisflows.SeisFlows method) poissons_ratio() (in module seisflows.tools.math) polynomial_fit() (in module seisflows.tools.math) postprocess_event_kernels() (seisflows.workflow.migration.Migration method) (seisflows.workflow.noise_inversion.NoiseInversion method) preconditioner (seisflows.optimize.gradient.Gradient attribute) prepare_data_for_solver() (seisflows.workflow.forward.Forward method) (seisflows.workflow.noise_inversion.NoiseInversion method) preprocess() (seisflows.preprocess.default.Default method) preprocess_log_level (seisflows.preprocess.pyaflowa.Pyaflowa attribute) print() (seisflows.seisflows.SeisFlows method) print_dialogue() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method) (seisflows.examples.ex2_hh_w_pyatoa.SFPyatoaEx2D method) (seisflows.examples.ex3_fwd_solver.SFFwdEx2D method) (seisflows.examples.sfexample2d.SFExample2D method) print_stats() (seisflows.tools.model.Model method) prune_scratch (seisflows.solver.specfem.Specfem attribute) (seisflows.solver.specfem3d.Specfem3D attribute) (seisflows.solver.specfem3d_globe.Specfem3DGlobe attribute) pyadjoint_parameters (seisflows.preprocess.pyaflowa.Pyaflowa attribute) Pyaflowa (class in seisflows.preprocess.pyaflowa) pyflex_parameters (seisflows.preprocess.pyaflowa.Pyaflowa attribute)

Q

quantify_misfit() (seisflows.preprocess.default.Default method) (seisflows.preprocess.pyaflowa.Pyaflowa method)

query_job_states() (seisflows.system.cluster.Cluster method) (seisflows.system.fujitsu.Fujitsu method) (seisflows.system.slurm.Slurm method)

R

read() (in module seisflows.preprocess.default) (seisflows.tools.model.Model method) read_ascii() (in module seisflows.preprocess.default) read_coordinates_specfem2d() (seisflows.tools.model.Model method) read_fortran_binary() (in module seisflows.tools.specfem) regions (seisflows.solver.specfem3d_globe.Specfem3DGlobe attribute) rename() (in module seisflows.tools.unix) rename_as_adjoint_source() (in module seisflows.tools.specfem) rerun (seisflows.system.workstation.Workstation attribute) resample() (in module seisflows.tools.signal) reset() (seisflows.seisflows.SeisFlows method) restart() (seisflows.optimize.gradient.Gradient method) (seisflows.optimize.LBFGS.LBFGS method) (seisflows.optimize.NLCG.NLCG method) (seisflows.seisflows.SeisFlows method) return_matching_waveform_files() (in module seisflows.tools.specfem) return_modules() (in module seisflows.seisflows) revalidate (seisflows.preprocess.pyaflowa.Pyaflowa attribute) ricker() (in module seisflows.plugins.preprocess.wavelets) rm() (in module seisflows.tools.unix) ROOT_DIR (in module seisflows) rosenbrock_gradient() (in module seisflows.tests.test_optimize) rosenbrock_objective_function() (in module seisflows.tests.test_optimize) rotate_ne_trace_to_rt() (in module seisflows.tools.noise) rotate_ne_traces_to_rt() (seisflows.workflow.noise_inversion.NoiseInversion method) rotate_rt_adjsrc_to_ne() (in module seisflows.tools.noise) rotate_rt_adjsrcs_to_ne() (seisflows.workflow.noise_inversion.NoiseInversion method) rscgrp (seisflows.system.fujitsu.Fujitsu attribute) (seisflows.system.wisteria.Wisteria attribute) run() (seisflows.system.cluster.Cluster method) (seisflows.system.frontera.Frontera method) (seisflows.system.fujitsu.Fujitsu method) (seisflows.system.lsf.Lsf method) (seisflows.system.singularity.Singularity method) (seisflows.system.slurm.Slurm method) (seisflows.system.workstation.Workstation method) (seisflows.workflow.forward.Forward method) (seisflows.workflow.inversion.Inversion method) (seisflows.workflow.test_flow.TestFlow method)

run_adjoint_simulations() (seisflows.workflow.migration.Migration method) run_call() (seisflows.system.chinook.Chinook method) (seisflows.system.fujitsu.Fujitsu method) (seisflows.system.slurm.Slurm method) run_call_header (seisflows.system.cluster.Cluster property) (seisflows.system.frontera.Frontera property) (seisflows.system.maui.Maui property) (seisflows.system.singularity.Singularity property) run_example (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D attribute) (seisflows.examples.sfexample2d.SFExample2D attribute) run_forward_simulations() (seisflows.workflow.forward.Forward method) (seisflows.workflow.inversion.Inversion method) (seisflows.workflow.noise_inversion.NoiseInversion method) run_functions (seisflows.system.cluster.Cluster attribute) (seisflows.system.wisteria.Wisteria attribute) run_rt_adjoint_simulations() (seisflows.workflow.noise_inversion.NoiseInversion method) run_sf_example() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method) (seisflows.examples.sfexample2d.SFExample2D method) run_xspecfem2d_binaries() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method) (seisflows.examples.sfexample2d.SFExample2D method) run_zz_adjoint_simulations() (seisflows.workflow.noise_inversion.NoiseInversion method)

S

save_vector() (seisflows.optimize.gradient.Gradient method) scale_mask_region (seisflows.solver.specfem3d_globe.Specfem3DGlobe attribute) seisflows module SeisFlows (class in seisflows.seisflows) seisflows.examples module seisflows.examples.ex1_homogeneous_halfspace module seisflows.examples.ex2_hh_w_pyatoa module seisflows.examples.ex3_fwd_solver module seisflows.examples.sfexample2d module seisflows.optimize module seisflows.optimize.gradient module seisflows.optimize.LBFGS module seisflows.optimize.NLCG module seisflows.plugins module seisflows.plugins.line_search module seisflows.plugins.line_search.backtrack module seisflows.plugins.line_search.bracket module seisflows.plugins.preprocess module seisflows.plugins.preprocess.adjoint module seisflows.plugins.preprocess.misfit module seisflows.plugins.preprocess.wavelets module seisflows.preprocess module seisflows.preprocess.default module seisflows.preprocess.pyaflowa module seisflows.seisflows module seisflows.solver module seisflows.solver.specfem module seisflows.solver.specfem2d module seisflows.solver.specfem3d module seisflows.solver.specfem3d_globe module seisflows.system module seisflows.system.chinook module seisflows.system.cluster module seisflows.system.frontera module seisflows.system.fujitsu module seisflows.system.lsf module seisflows.system.maui module seisflows.system.runscripts module seisflows.system.runscripts.run_funcs module seisflows.system.runscripts.submit_workflow module seisflows.system.singularity module seisflows.system.slurm module seisflows.system.wisteria module seisflows.system.workstation module seisflows.tests module seisflows.tests.test_optimize module seisflows.tests.test_preprocess module seisflows.tests.test_seisflows module seisflows.tests.test_solver module seisflows.tests.test_system module seisflows.tests.test_tools module seisflows.tools module seisflows.tools.array module seisflows.tools.config module seisflows.tools.graphics module seisflows.tools.math module seisflows.tools.model module seisflows.tools.msg module seisflows.tools.noise module

seisflows.tools.signal module seisflows.tools.specfem module seisflows.tools.unix module seisflows.workflow module seisflows.workflow.forward module seisflows.workflow.inversion module seisflows.workflow.migration module seisflows.workflow.noise_inversion module seisflows.workflow.test_flow module select() (in module seisflows.tools.unix) sempar() (seisflows.seisflows.SeisFlows method) set_parameters() (seisflows.solver.specfem.Specfem method) set_task_id() (in module seisflows.tools.config) setpar() (in module seisflows.tools.specfem) setpar_vel_model() (in module seisflows.tools.specfem) setup() (seisflows.optimize.gradient.Gradient method) (seisflows.optimize.LBFGS.LBFGS method) (seisflows.preprocess.default.Default method) (seisflows.preprocess.pyaflowa.Pyaflowa method) (seisflows.seisflows.SeisFlows method) (seisflows.solver.specfem.Specfem method) (seisflows.solver.specfem2d.Specfem2D method) (seisflows.solver.specfem3d.Specfem3D method) (seisflows.system.singularity.Singularity method) (seisflows.system.workstation.Workstation method) (seisflows.tools.model.Model method) (seisflows.workflow.forward.Forward method) (seisflows.workflow.inversion.Inversion method) (seisflows.workflow.noise_inversion.NoiseInversion method) (seisflows.workflow.test_flow.TestFlow method) setup_optimization_vectors() (in module seisflows.tests.test_optimize) setup_seisflows_working_directory() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method) (seisflows.examples.sfexample2d.SFExample2D method) setup_specfem2d_for_model_init() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method) (seisflows.examples.sfexample2d.SFExample2D method) setup_specfem2d_for_model_true() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method) (seisflows.examples.ex2_hh_w_pyatoa.SFPyatoaEx2D method) (seisflows.examples.ex3_fwd_solver.SFFwdEx2D method) (seisflows.examples.sfexample2d.SFExample2D method) sf (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D attribute) (seisflows.examples.sfexample2d.SFExample2D attribute) SFExample2D (class in seisflows.examples.ex1_homogeneous_halfspace) (class in seisflows.examples.sfexample2d) SFFwdEx2D (class in seisflows.examples.ex3_fwd_solver) sfparser() (in module seisflows.seisflows) SFPyatoaEx2D (class in seisflows.examples.ex2_hh_w_pyatoa) short_dist (seisflows.preprocess.default.Default attribute) Singularity (class in seisflows.system.singularity) singularity_exec (seisflows.system.singularity.Singularity attribute) Slurm (class in seisflows.system.slurm) slurm_args (seisflows.system.slurm.Slurm attribute) smooth() (seisflows.solver.specfem.Specfem method) (seisflows.solver.specfem2d.Specfem2D method) (seisflows.solver.specfem3d_globe.Specfem3DGlobe method) smooth_h (seisflows.solver.specfem.Specfem attribute) smooth_type (seisflows.solver.specfem.Specfem attribute) smooth_v (seisflows.solver.specfem.Specfem attribute) sortrows() (in module seisflows.tools.array) SOURCE_KEYS (in module seisflows.tools.specfem) source_name (seisflows.solver.specfem.Specfem property) source_names (seisflows.solver.specfem.Specfem property) source_prefix (seisflows.preprocess.default.Default attribute) (seisflows.preprocess.pyaflowa.Pyaflowa attribute) (seisflows.solver.specfem.Specfem attribute) Specfem (class in seisflows.solver.specfem) Specfem2D (class in seisflows.solver.specfem2d) Specfem3D (class in seisflows.solver.specfem3d) Specfem3DGlobe (class in seisflows.solver.specfem3d_globe) split() (seisflows.tools.model.Model method) start (seisflows.workflow.inversion.Inversion attribute) step_count (seisflows.optimize.gradient.Gradient property) (seisflows.plugins.line_search.Bracket attribute) (seisflows.plugins.line_search.bracket.Bracket attribute) step_count_max (seisflows.optimize.gradient.Gradient attribute) (seisflows.plugins.line_search.Bracket attribute) (seisflows.plugins.line_search.bracket.Bracket attribute) step_len_init (seisflows.optimize.gradient.Gradient attribute) step_len_max (seisflows.optimize.gradient.Gradient attribute) step_len_min (seisflows.optimize.gradient.Gradient attribute) step_lens (seisflows.plugins.line_search.Bracket attribute) (seisflows.plugins.line_search.bracket.Bracket attribute) stop_after (seisflows.workflow.forward.Forward attribute) sub() (in module seisflows.tools.msg) submit() (seisflows.seisflows.SeisFlows method) (seisflows.system.cluster.Cluster method) (seisflows.system.fujitsu.Fujitsu method) (seisflows.system.lsf.Lsf method) (seisflows.system.singularity.Singularity method) (seisflows.system.workstation.Workstation method) submit_call_header (seisflows.system.chinook.Chinook property) (seisflows.system.cluster.Cluster property) (seisflows.system.frontera.Frontera property) (seisflows.system.fujitsu.Fujitsu property) (seisflows.system.maui.Maui property) (seisflows.system.slurm.Slurm property) submit_to (seisflows.system.chinook.Chinook attribute) (seisflows.system.frontera.Frontera attribute) (seisflows.system.slurm.Slurm attribute) submit_workflow (seisflows.system.cluster.Cluster attribute) (seisflows.system.wisteria.Wisteria attribute) sum_all_residuals() (seisflows.workflow.noise_inversion.NoiseInversion method) sum_residuals() (seisflows.workflow.inversion.Inversion method) swap() (seisflows.seisflows.SeisFlows method) syn_data_format (seisflows.preprocess.default.Default attribute) (seisflows.preprocess.pyaflowa.Pyaflowa attribute) (seisflows.solver.specfem.Specfem attribute)

T

task_ids() (seisflows.system.slurm.Slurm method) (seisflows.system.workstation.Workstation method) task_list (seisflows.workflow.forward.Forward property) (seisflows.workflow.inversion.Inversion property) (seisflows.workflow.migration.Migration property) (seisflows.workflow.noise_inversion.NoiseInversion property) (seisflows.workflow.test_flow.TestFlow property) taskid() (seisflows.system.lsf.Lsf method) tasktime (seisflows.system.singularity.Singularity attribute) (seisflows.system.workstation.Workstation attribute) test_array_job_rerun() (seisflows.workflow.test_flow.TestFlow method) test_bracket_line_search() (in module seisflows.tests.test_optimize) test_call_seisflows() (in module seisflows.tests.test_seisflows) test_cluster_run() (in module seisflows.tests.test_system) test_cluster_run_single() (in module seisflows.tests.test_system) test_cmd_configure() (in module seisflows.tests.test_seisflows) test_cmd_par() (in module seisflows.tests.test_seisflows) test_cmd_setup() (in module seisflows.tests.test_seisflows) test_custom_import() (in module seisflows.tests.test_tools) TEST_DATA (in module seisflows.tests.test_preprocess) (in module seisflows.tests.test_solver) test_default_initialize_adjoint_traces() (in module seisflows.tests.test_preprocess) test_default_quantify_misfit() (in module seisflows.tests.test_preprocess) test_default_read() (in module seisflows.tests.test_preprocess) test_default_write() (in module seisflows.tests.test_preprocess) TEST_DIR (in module seisflows.tests.test_seisflows) (in module seisflows.tests.test_tools) test_edited_parameter_file_name() (in module seisflows.tests.test_seisflows) test_gradient_compute_direction() (in module seisflows.tests.test_optimize) test_gradient_initialize_search() (in module seisflows.tests.test_optimize) test_gradient_update_line_search() (in module seisflows.tests.test_optimize) test_initialize_working_directory() (in module seisflows.tests.test_solver) test_inversion_optimization_problem_with_gradient() (in module seisflows.tests.test_optimize)

test_inversion_optimization_problem_with_LBFGS() (in module seisflows.tests.test_optimize) test_inversion_optimization_problem_with_NLCG() (in module seisflows.tests.test_optimize) test_line_search_recover_from_failure() (in module seisflows.tests.test_optimize) TEST_MODEL (in module seisflows.tests.test_tools) test_model_attributes() (in module seisflows.tests.test_tools) test_model_from_input_vector() (in module seisflows.tests.test_tools) test_model_functions() (in module seisflows.tests.test_tools) test_model_io() (in module seisflows.tests.test_tools) test_optimize_attempt_line_search_restart() (in module seisflows.tests.test_optimize) test_optimize_checkpoint_reload() (in module seisflows.tests.test_optimize) test_partial_array_job_failure() (seisflows.workflow.test_flow.TestFlow method) test_pyaflowa_check_fixed_windows() (in module seisflows.tests.test_preprocess) test_pyaflowa_line_search() (in module seisflows.tests.test_preprocess) test_pyaflowa_setup() (in module seisflows.tests.test_preprocess) test_pyaflowa_setup_config() (in module seisflows.tests.test_preprocess) test_run_binary() (in module seisflows.tests.test_solver) test_single_job_failure() (seisflows.workflow.test_flow.TestFlow method) TEST_SOLVER (in module seisflows.tests.test_preprocess) test_source_names() (in module seisflows.tests.test_solver) test_system_print_hello_world() (seisflows.workflow.test_flow.TestFlow method) test_workstation_run() (in module seisflows.tests.test_system) test_workstation_run_single() (in module seisflows.tests.test_system) TestFlow (class in seisflows.workflow.test_flow) thrifty (seisflows.workflow.inversion.Inversion attribute) tif_to_array() (in module seisflows.tools.graphics) tile_imgs() (in module seisflows.tools.graphics) touch() (in module seisflows.tools.unix) trace_path() (seisflows.workflow.noise_inversion.NoiseInversion method) traveltime() (in module seisflows.plugins.preprocess.adjoint) (in module seisflows.plugins.preprocess.misfit) traveltime_inexact() (in module seisflows.plugins.preprocess.adjoint) (in module seisflows.plugins.preprocess.misfit) trim() (in module seisflows.tools.signal) tv() (in module seisflows.tools.math)

U

uniquerows() (in module seisflows.tools.array) unit_output (seisflows.preprocess.default.Default attribute) update() (seisflows.tools.model.Model method) update_count (seisflows.plugins.line_search.Bracket property) (seisflows.plugins.line_search.bracket.Bracket property)

update_density (seisflows.solver.specfem.Specfem attribute) update_line_search() (seisflows.workflow.inversion.Inversion method) update_search() (seisflows.optimize.gradient.Gradient method) update_search_history() (seisflows.plugins.line_search.Bracket method) (seisflows.plugins.line_search.bracket.Bracket method) user (seisflows.system.frontera.Frontera attribute)

V

vector (seisflows.tools.model.Model property) velocity() (in module seisflows.plugins.preprocess.adjoint) (in module seisflows.plugins.preprocess.misfit)

verbose (seisflows.system.workstation.Workstation attribute)

W

walltime (seisflows.system.cluster.Cluster attribute) warning (in module seisflows.plugins.preprocess.wavelets) waveform() (in module seisflows.plugins.preprocess.adjoint) (in module seisflows.plugins.preprocess.misfit) which() (in module seisflows.tools.unix)

Wisteria (class in seisflows.system.wisteria) Workstation (class in seisflows.system.workstation) write() (in module seisflows.preprocess.default) (seisflows.tools.model.Model method) write_fortran_binary() (in module seisflows.tools.specfem) write_stats() (seisflows.optimize.gradient.Gradient method)