SeisFlows
latest
Introduction
Overview
Getting Started
Background
Structure
Commmand Line Tool
Parameter File
Working Directory
Examples
Specfem2D Workstation Examples
2D Example Walkthrough
HPC Example on UAF Chinook
How To's
Tips and Tricks
Setting up on a Cluster
SeisFlows in Containers
Development
Extending the Codebase
Change Log
Code Development Plan
API Reference
SeisFlows
Index
Edit on GitHub
Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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P
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Q
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R
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S
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T
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U
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V
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W
_
__bool__() (seisflows.tools.config.Null method)
__call__() (seisflows.seisflows.SeisFlows method)
(seisflows.tools.config.Null method)
__delattr__() (seisflows.tools.config.Null method)
__doc__ (seisflows.optimize.LBFGS.LBFGS attribute)
(seisflows.optimize.NLCG.NLCG attribute)
(seisflows.solver.specfem2d.Specfem2D attribute)
(seisflows.solver.specfem3d.Specfem3D attribute)
(seisflows.solver.specfem3d_globe.Specfem3DGlobe attribute)
(seisflows.system.chinook.Chinook attribute)
(seisflows.system.cluster.Cluster attribute)
(seisflows.system.maui.Maui attribute)
(seisflows.system.singularity.Singularity attribute)
(seisflows.system.slurm.Slurm attribute)
(seisflows.workflow.inversion.Inversion attribute)
(seisflows.workflow.migration.Migration attribute)
__getattr__() (seisflows.tools.config.Dict method)
(seisflows.tools.config.Null method)
__nonzero__() (seisflows.tools.config.Null method)
__path__ (in module seisflows)
(in module seisflows.optimize)
(in module seisflows.plugins)
(in module seisflows.preprocess)
(in module seisflows.solver)
(in module seisflows.system)
(in module seisflows.workflow)
__repr__() (seisflows.tools.config.Dict method)
__setattr__() (seisflows.tools.config.Dict method)
(seisflows.tools.config.Null method)
__str__() (seisflows.tools.config.Dict method)
_apply_filter() (seisflows.preprocess.default.Default method)
_apply_inverse_hessian() (seisflows.optimize.LBFGS.LBFGS method)
_apply_mute() (seisflows.preprocess.default.Default method)
_apply_normalize() (seisflows.preprocess.default.Default method)
_calculate_misfit() (seisflows.preprocess.default.Default method)
_check_2d3d_parameters() (seisflows.tools.model.Model method)
_check_3dglobe_parameters() (seisflows.tools.model.Model method)
_check_adjoint_traces() (seisflows.preprocess.default.Default method)
_check_bracket() (in module seisflows.plugins.line_search.bracket)
_check_fixed_windows() (seisflows.preprocess.pyaflowa.Pyaflowa method)
_check_job_status() (seisflows.system.lsf.Lsf method)
_check_mpi_executable() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method)
(seisflows.examples.sfexample2d.SFExample2D method)
_check_status() (seisflows.optimize.LBFGS.LBFGS method)
_collect_tmp_log_files() (seisflows.preprocess.pyaflowa.Pyaflowa method)
_config_adjtomo_loggers() (seisflows.preprocess.pyaflowa.Pyaflowa method)
_convert_to_array() (in module seisflows.tools.graphics)
_cscale() (in module seisflows.tools.graphics)
_evaluate_line_search_misfit() (seisflows.workflow.inversion.Inversion method)
_exc2log() (seisflows.solver.specfem.Specfem static method)
_export_starting_models() (seisflows.solver.specfem.Specfem method)
_fletcher_reeves() (seisflows.optimize.NLCG.NLCG method)
_gabor() (in module seisflows.plugins.preprocess.wavelets)
_gauss() (in module seisflows.plugins.preprocess.wavelets)
_generate_adjsrc() (seisflows.preprocess.default.Default method)
_get_log_file() (seisflows.system.workstation.Workstation method)
_get_nproc_parameters() (seisflows.tools.model.Model method)
_get_offsets() (in module seisflows.tools.graphics)
_get_time() (in module seisflows.tools.graphics)
_good_enough() (in module seisflows.plugins.line_search.bracket)
_guess_file_format() (seisflows.tools.model.Model method)
_guess_specfem_flavor() (seisflows.tools.model.Model method)
_initialize_working_directories() (seisflows.solver.specfem.Specfem method)
_initialize_working_directory() (seisflows.solver.specfem.Specfem method)
_inspect_class_that_defined_method() (seisflows.seisflows.SeisFlows method)
_inspect_module_hierarchy() (seisflows.seisflows.SeisFlows method)
_iterable() (in module seisflows.tools.unix)
_job_id_list() (seisflows.system.lsf.Lsf method)
_load2d3d() (seisflows.tools.model.Model method)
_make_evaluation_composite_pdf() (seisflows.preprocess.pyaflowa.Pyaflowa method)
_make_event_figure_pdf() (seisflows.preprocess.pyaflowa.Pyaflowa method)
_modify_run_call_single_proc() (in module seisflows.system.lsf)
_pollak_ribere() (seisflows.optimize.NLCG.NLCG method)
_precondition() (seisflows.optimize.gradient.Gradient method)
_print_examples() (seisflows.seisflows.SeisFlows static method)
_print_inheritance() (seisflows.seisflows.SeisFlows method)
_print_modules() (seisflows.seisflows.SeisFlows method)
_print_stats() (seisflows.plugins.line_search.Bracket method)
(seisflows.plugins.line_search.bracket.Bracket method)
_print_tasks() (seisflows.seisflows.SeisFlows method)
_public_methods (seisflows.seisflows.SeisFlows property)
_query() (seisflows.system.lsf.Lsf method)
_read_model_adios() (seisflows.tools.model.Model method)
_read_model_ascii() (seisflows.tools.model.Model method)
_read_model_fortran_binary() (seisflows.tools.model.Model method)
_rename_as_adjoint_source() (seisflows.preprocess.default.Default method)
_run_binary() (seisflows.solver.specfem.Specfem method)
_run_task() (seisflows.system.cluster.Cluster method)
_setup_quantify_misfit() (seisflows.preprocess.default.Default method)
_stdout_to_job_id() (seisflows.system.frontera.Frontera static method)
(seisflows.system.slurm.Slurm static method)
_test_function_a() (in module seisflows.tests.test_system)
_test_function_b() (in module seisflows.tests.test_system)
_test_inversion_optimization_problem_general() (in module seisflows.tests.test_optimize)
_update_ngll_from_model() (seisflows.tools.model.Model method)
_update_search_history() (seisflows.optimize.LBFGS.LBFGS method)
_update_thrifty_status() (seisflows.workflow.inversion.Inversion method)
_write_model_fortran_binary() (seisflows.tools.model.Model method)
_write_stats() (seisflows.optimize.gradient.Gradient method)
A
acceleration() (in module seisflows.plugins.preprocess.adjoint)
(in module seisflows.plugins.preprocess.misfit)
acceptable_parameters (seisflows.tools.model.Model attribute)
adjoint_simulation() (seisflows.solver.specfem.Specfem method)
(seisflows.solver.specfem3d.Specfem3D method)
(seisflows.solver.specfem3d_globe.Specfem3DGlobe method)
amplitude() (in module seisflows.plugins.preprocess.adjoint)
(in module seisflows.plugins.preprocess.misfit)
ancil_run_call_header (seisflows.system.maui.Maui property)
angle() (in module seisflows.tools.math)
args (in module seisflows.system.runscripts.run_funcs)
(in module seisflows.system.runscripts.submit_workflow)
ascii_logo (in module seisflows.tools.msg)
ascii_logo_small (in module seisflows.tools.msg)
attempt_line_search_restart() (seisflows.optimize.gradient.Gradient method)
B
Backtrack (class in seisflows.plugins.line_search)
(class in seisflows.plugins.line_search.backtrack)
BAD_STATES (in module seisflows.system.slurm)
base_parameter_file (in module seisflows.tools.msg)
Bracket (class in seisflows.plugins.line_search)
(class in seisflows.plugins.line_search.bracket)
C
calculate_step_length() (seisflows.plugins.line_search.Backtrack method)
(seisflows.plugins.line_search.backtrack.Backtrack method)
(seisflows.plugins.line_search.Bracket method)
(seisflows.plugins.line_search.bracket.Bracket method)
cat() (in module seisflows.tools.unix)
cd() (in module seisflows.tools.unix)
check() (seisflows.optimize.gradient.Gradient method)
(seisflows.preprocess.default.Default method)
(seisflows.preprocess.pyaflowa.Pyaflowa method)
(seisflows.seisflows.SeisFlows method)
(seisflows.solver.specfem.Specfem method)
(seisflows.solver.specfem3d_globe.Specfem3DGlobe method)
(seisflows.system.frontera.Frontera method)
(seisflows.system.maui.Maui method)
(seisflows.system.slurm.Slurm method)
(seisflows.system.workstation.Workstation method)
(seisflows.tools.model.Model method)
(seisflows.workflow.forward.Forward method)
(seisflows.workflow.inversion.Inversion method)
(seisflows.workflow.test_flow.TestFlow method)
check_conjugacy() (in module seisflows.optimize.NLCG)
check_descent() (in module seisflows.optimize.NLCG)
check_job_status_array() (in module seisflows.system.slurm)
check_job_status_list() (in module seisflows.system.slurm)
check_search_history() (seisflows.plugins.line_search.Bracket method)
(seisflows.plugins.line_search.bracket.Bracket method)
check_source_names() (in module seisflows.tools.specfem)
checkpoint() (seisflows.optimize.gradient.Gradient method)
(seisflows.optimize.LBFGS.LBFGS method)
(seisflows.optimize.NLCG.NLCG method)
(seisflows.system.lsf.Lsf method)
(seisflows.workflow.forward.Forward method)
(seisflows.workflow.inversion.Inversion method)
Chinook (class in seisflows.system.chinook)
clean() (seisflows.seisflows.SeisFlows method)
cleanup_xspecfem2d_run() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method)
(seisflows.examples.sfexample2d.SFExample2D method)
clear_search_history() (seisflows.plugins.line_search.Bracket method)
(seisflows.plugins.line_search.bracket.Bracket method)
cli() (in module seisflows.tools.msg)
Cluster (class in seisflows.system.cluster)
combine() (seisflows.solver.specfem.Specfem method)
(seisflows.solver.specfem3d_globe.Specfem3DGlobe method)
combine_vol_data_vtk() (seisflows.solver.specfem3d.Specfem3D method)
(seisflows.solver.specfem3d_globe.Specfem3DGlobe method)
compute_direction() (seisflows.optimize.gradient.Gradient method)
(seisflows.optimize.LBFGS.LBFGS method)
(seisflows.optimize.NLCG.NLCG method)
config_logger() (in module seisflows.tools.config)
configure() (seisflows.seisflows.SeisFlows method)
configure_specfem2d() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method)
(seisflows.examples.sfexample2d.SFExample2D method)
copy() (seisflows.tools.model.Model method)
count_zeros() (in module seisflows.tools.array)
cp() (in module seisflows.tools.unix)
create_specfem2d_working_directory() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method)
(seisflows.examples.sfexample2d.SFExample2D method)
custom_import() (in module seisflows.tools.config)
cwd (seisflows.solver.specfem.Specfem property)
D
data_filenames() (seisflows.solver.specfem.Specfem method)
data_wildcard() (seisflows.solver.specfem.Specfem method)
(seisflows.solver.specfem3d.Specfem3D method)
(seisflows.solver.specfem3d_globe.Specfem3DGlobe method)
debug() (seisflows.seisflows.SeisFlows method)
Default (class in seisflows.preprocess.default)
define_dir_structures() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D static method)
(seisflows.examples.sfexample2d.SFExample2D static method)
DEG (in module seisflows.tools.msg)
Dict (class in seisflows.tools.config)
displacement() (in module seisflows.plugins.preprocess.adjoint)
(in module seisflows.plugins.preprocess.misfit)
dot() (in module seisflows.tools.math)
download_specfem2d() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method)
(seisflows.examples.sfexample2d.SFExample2D method)
E
ENV_VARIABLES (in module seisflows.tools.config)
envelope() (in module seisflows.plugins.preprocess.adjoint)
(in module seisflows.plugins.preprocess.misfit)
envelope2() (in module seisflows.plugins.preprocess.adjoint)
(in module seisflows.plugins.preprocess.misfit)
envelope3() (in module seisflows.plugins.preprocess.adjoint)
(in module seisflows.plugins.preprocess.misfit)
evaluate_gradient_from_kernels() (seisflows.workflow.inversion.Inversion method)
(seisflows.workflow.migration.Migration method)
evaluate_initial_misfit() (seisflows.workflow.forward.Forward method)
(seisflows.workflow.inversion.Inversion method)
evaluate_objective_function() (seisflows.workflow.forward.Forward method)
(seisflows.workflow.inversion.Inversion method)
examples() (seisflows.seisflows.SeisFlows method)
export() (in module seisflows.system.runscripts.run_funcs)
F
finalize() (seisflows.preprocess.default.Default method)
(seisflows.preprocess.pyaflowa.Pyaflowa method)
finalize_iteration() (seisflows.workflow.inversion.Inversion method)
finalize_search() (seisflows.optimize.gradient.Gradient method)
finalize_specfem2d_par_file() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method)
(seisflows.examples.sfexample2d.SFExample2D method)
fnfmt() (seisflows.tools.model.Model method)
Forward (class in seisflows.workflow.forward)
forward_simulation() (seisflows.solver.specfem.Specfem method)
(seisflows.solver.specfem3d.Specfem3D method)
(seisflows.solver.specfem3d_globe.Specfem3DGlobe method)
Frontera (class in seisflows.system.frontera)
ftag() (seisflows.preprocess.pyaflowa.Pyaflowa static method)
G
gabor() (in module seisflows.plugins.preprocess.wavelets)
gaussian() (in module seisflows.tools.math)
get_receiver_coords() (in module seisflows.tools.signal)
get_regular_ticks() (in module seisflows.tools.graphics)
get_search_history() (seisflows.plugins.line_search.Bracket method)
(seisflows.plugins.line_search.bracket.Bracket method)
get_source_coords() (in module seisflows.tools.signal)
get_task_id() (in module seisflows.tools.config)
getpar() (in module seisflows.tools.specfem)
getpar_vel_model() (in module seisflows.tools.specfem)
grad() (in module seisflows.tools.math)
Gradient (class in seisflows.optimize.gradient)
grid2mesh() (in module seisflows.tools.array)
gridsmooth() (in module seisflows.tools.array)
H
hilbert() (in module seisflows.tools.math)
hostname() (in module seisflows.tools.unix)
I
import_model() (seisflows.solver.specfem.Specfem method)
import_seisflows() (in module seisflows.tools.config)
init() (seisflows.seisflows.SeisFlows method)
initialize_adjoint_traces() (seisflows.preprocess.default.Default method)
initialize_line_search() (seisflows.workflow.inversion.Inversion method)
initialize_search() (seisflows.optimize.gradient.Gradient method)
instantaneous_phase() (in module seisflows.plugins.preprocess.adjoint)
(in module seisflows.plugins.preprocess.misfit)
instantaneous_phase2() (in module seisflows.plugins.preprocess.adjoint)
(in module seisflows.plugins.preprocess.misfit)
Inversion (class in seisflows.workflow.inversion)
K
kernel_databases (seisflows.solver.specfem.Specfem property)
(seisflows.solver.specfem3d.Specfem3D property)
(seisflows.solver.specfem3d_globe.Specfem3DGlobe property)
L
LBFGS (class in seisflows.optimize.LBFGS)
ln() (in module seisflows.tools.unix)
load() (seisflows.tools.model.Model method)
load_checkpoint() (seisflows.optimize.gradient.Gradient method)
(seisflows.optimize.LBFGS.LBFGS method)
load_vector() (seisflows.optimize.gradient.Gradient method)
load_yaml() (in module seisflows.tools.config)
logger (in module seisflows)
(in module seisflows.optimize)
(in module seisflows.plugins)
(in module seisflows.preprocess)
(in module seisflows.solver)
(in module seisflows.system)
(in module seisflows.workflow)
ls() (in module seisflows.tools.unix)
Lsf (class in seisflows.system.lsf)
lsq2() (in module seisflows.tools.math)
M
main() (in module seisflows.seisflows)
(seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method)
(seisflows.examples.ex3_fwd_solver.SFFwdEx2D method)
(seisflows.examples.sfexample2d.SFExample2D method)
make_specfem2d_executables() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method)
(seisflows.examples.sfexample2d.SFExample2D method)
mask() (in module seisflows.tools.signal)
Maui (class in seisflows.system.maui)
merge() (seisflows.tools.model.Model method)
mesh2grid() (in module seisflows.tools.array)
meshsmooth() (in module seisflows.tools.array)
Migration (class in seisflows.workflow.migration)
mjr() (in module seisflows.tools.msg)
mkdir() (in module seisflows.tools.unix)
mnr() (in module seisflows.tools.msg)
Model (class in seisflows.tools.model)
model_databases (seisflows.solver.specfem.Specfem property)
(seisflows.solver.specfem3d.Specfem3D property)
(seisflows.solver.specfem3d_globe.Specfem3DGlobe property)
model_files (seisflows.solver.specfem.Specfem property)
model_wildcard() (seisflows.solver.specfem.Specfem method)
modify_run_call_single_proc() (in module seisflows.system.slurm)
module
seisflows
seisflows.examples
seisflows.examples.ex1_homogeneous_halfspace
seisflows.examples.ex2_hh_w_pyatoa
seisflows.examples.ex3_fwd_solver
seisflows.examples.sfexample2d
seisflows.optimize
seisflows.optimize.gradient
seisflows.optimize.LBFGS
seisflows.optimize.NLCG
seisflows.plugins
seisflows.plugins.line_search
seisflows.plugins.line_search.backtrack
seisflows.plugins.line_search.bracket
seisflows.plugins.preprocess
seisflows.plugins.preprocess.adjoint
seisflows.plugins.preprocess.misfit
seisflows.plugins.preprocess.wavelets
seisflows.preprocess
seisflows.preprocess.default
seisflows.preprocess.pyaflowa
seisflows.seisflows
seisflows.solver
seisflows.solver.specfem
seisflows.solver.specfem2d
seisflows.solver.specfem3d
seisflows.solver.specfem3d_globe
seisflows.system
seisflows.system.chinook
seisflows.system.cluster
seisflows.system.frontera
seisflows.system.lsf
seisflows.system.maui
seisflows.system.runscripts
seisflows.system.runscripts.run_funcs
seisflows.system.runscripts.submit_workflow
seisflows.system.singularity
seisflows.system.slurm
seisflows.system.workstation
seisflows.tests
seisflows.tests.test_optimize
seisflows.tests.test_preprocess
seisflows.tests.test_seisflows
seisflows.tests.test_solver
seisflows.tests.test_system
seisflows.tests.test_tools
seisflows.tools
seisflows.tools.array
seisflows.tools.config
seisflows.tools.graphics
seisflows.tools.math
seisflows.tools.model
seisflows.tools.msg
seisflows.tools.signal
seisflows.tools.specfem
seisflows.tools.unix
seisflows.workflow
seisflows.workflow.forward
seisflows.workflow.inversion
seisflows.workflow.migration
seisflows.workflow.test_flow
mute_arrivals() (in module seisflows.tools.signal)
mute_offsets() (in module seisflows.tools.signal)
mv() (in module seisflows.tools.unix)
N
nabla() (in module seisflows.tools.math)
nabla2() (in module seisflows.tools.math)
NAMES (in module seisflows)
ngll (seisflows.tools.model.Model property)
NLCG (class in seisflows.optimize.NLCG)
node_size (seisflows.system.slurm.Slurm property)
nodes (seisflows.system.slurm.Slurm property)
nproc (seisflows.tools.model.Model property)
nproc() (in module seisflows.tools.unix)
Null (class in seisflows.tools.config)
number_fid() (in module seisflows.tools.config)
P
par() (seisflows.seisflows.SeisFlows method)
par_file() (in module seisflows.tests.test_seisflows)
par_file_dict() (in module seisflows.tests.test_seisflows)
parabolic_backtrack() (in module seisflows.tools.math)
parameters (seisflows.tools.model.Model property)
parse_args() (in module seisflows.system.runscripts.run_funcs)
(in module seisflows.system.runscripts.submit_workflow)
perform_line_search() (seisflows.workflow.inversion.Inversion method)
pickle_function_list() (in module seisflows.tools.config)
plot2d() (seisflows.seisflows.SeisFlows method)
(seisflows.tools.model.Model method)
plot_2d_contour() (in module seisflows.tools.graphics)
plot_2d_image() (in module seisflows.tools.graphics)
plot_section() (in module seisflows.tools.graphics)
plot_vector() (in module seisflows.tools.graphics)
plotst() (seisflows.seisflows.SeisFlows method)
poissons_ratio() (in module seisflows.tools.math)
polynomial_fit() (in module seisflows.tools.math)
postprocess_event_kernels() (seisflows.workflow.migration.Migration method)
prepare_data_for_solver() (seisflows.workflow.forward.Forward method)
print() (seisflows.seisflows.SeisFlows method)
print_dialogue() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method)
(seisflows.examples.ex2_hh_w_pyatoa.SFPyatoaEx2D method)
(seisflows.examples.ex3_fwd_solver.SFFwdEx2D method)
(seisflows.examples.sfexample2d.SFExample2D method)
Pyaflowa (class in seisflows.preprocess.pyaflowa)
Q
quantify_misfit() (seisflows.preprocess.default.Default method)
(seisflows.preprocess.pyaflowa.Pyaflowa method)
quantify_misfit_station() (seisflows.preprocess.pyaflowa.Pyaflowa method)
query_job_states() (in module seisflows.system.slurm)
R
read() (seisflows.preprocess.default.Default method)
(seisflows.tools.model.Model method)
read_ascii() (in module seisflows.preprocess.default)
read_coordinates_specfem2d() (seisflows.tools.model.Model method)
read_fortran_binary() (in module seisflows.tools.specfem)
rename() (in module seisflows.tools.unix)
reset() (seisflows.seisflows.SeisFlows method)
restart() (seisflows.optimize.gradient.Gradient method)
(seisflows.optimize.LBFGS.LBFGS method)
(seisflows.optimize.NLCG.NLCG method)
(seisflows.seisflows.SeisFlows method)
return_modules() (in module seisflows.seisflows)
ricker() (in module seisflows.plugins.preprocess.wavelets)
rm() (in module seisflows.tools.unix)
ROOT_DIR (in module seisflows)
rosenbrock_gradient() (in module seisflows.tests.test_optimize)
rosenbrock_objective_function() (in module seisflows.tests.test_optimize)
run() (seisflows.system.cluster.Cluster method)
(seisflows.system.frontera.Frontera method)
(seisflows.system.lsf.Lsf method)
(seisflows.system.singularity.Singularity method)
(seisflows.system.slurm.Slurm method)
(seisflows.system.workstation.Workstation method)
(seisflows.workflow.forward.Forward method)
(seisflows.workflow.inversion.Inversion method)
(seisflows.workflow.test_flow.TestFlow method)
run_adjoint_simulations() (seisflows.workflow.migration.Migration method)
run_call_header (seisflows.system.chinook.Chinook property)
(seisflows.system.cluster.Cluster property)
(seisflows.system.frontera.Frontera property)
(seisflows.system.maui.Maui property)
(seisflows.system.singularity.Singularity property)
(seisflows.system.slurm.Slurm property)
run_forward_simulations() (seisflows.workflow.forward.Forward method)
run_sf_example() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method)
(seisflows.examples.sfexample2d.SFExample2D method)
run_xspecfem2d_binaries() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method)
(seisflows.examples.sfexample2d.SFExample2D method)
S
save() (seisflows.tools.model.Model method)
save_vector() (seisflows.optimize.gradient.Gradient method)
seisflows
module
SeisFlows (class in seisflows.seisflows)
seisflows.examples
module
seisflows.examples.ex1_homogeneous_halfspace
module
seisflows.examples.ex2_hh_w_pyatoa
module
seisflows.examples.ex3_fwd_solver
module
seisflows.examples.sfexample2d
module
seisflows.optimize
module
seisflows.optimize.gradient
module
seisflows.optimize.LBFGS
module
seisflows.optimize.NLCG
module
seisflows.plugins
module
seisflows.plugins.line_search
module
seisflows.plugins.line_search.backtrack
module
seisflows.plugins.line_search.bracket
module
seisflows.plugins.preprocess
module
seisflows.plugins.preprocess.adjoint
module
seisflows.plugins.preprocess.misfit
module
seisflows.plugins.preprocess.wavelets
module
seisflows.preprocess
module
seisflows.preprocess.default
module
seisflows.preprocess.pyaflowa
module
seisflows.seisflows
module
seisflows.solver
module
seisflows.solver.specfem
module
seisflows.solver.specfem2d
module
seisflows.solver.specfem3d
module
seisflows.solver.specfem3d_globe
module
seisflows.system
module
seisflows.system.chinook
module
seisflows.system.cluster
module
seisflows.system.frontera
module
seisflows.system.lsf
module
seisflows.system.maui
module
seisflows.system.runscripts
module
seisflows.system.runscripts.run_funcs
module
seisflows.system.runscripts.submit_workflow
module
seisflows.system.singularity
module
seisflows.system.slurm
module
seisflows.system.workstation
module
seisflows.tests
module
seisflows.tests.test_optimize
module
seisflows.tests.test_preprocess
module
seisflows.tests.test_seisflows
module
seisflows.tests.test_solver
module
seisflows.tests.test_system
module
seisflows.tests.test_tools
module
seisflows.tools
module
seisflows.tools.array
module
seisflows.tools.config
module
seisflows.tools.graphics
module
seisflows.tools.math
module
seisflows.tools.model
module
seisflows.tools.msg
module
seisflows.tools.signal
module
seisflows.tools.specfem
module
seisflows.tools.unix
module
seisflows.workflow
module
seisflows.workflow.forward
module
seisflows.workflow.inversion
module
seisflows.workflow.migration
module
seisflows.workflow.test_flow
module
select() (in module seisflows.tools.unix)
sempar() (seisflows.seisflows.SeisFlows method)
set_config() (seisflows.preprocess.pyaflowa.Pyaflowa method)
set_task_id() (in module seisflows.tools.config)
setpar() (in module seisflows.tools.specfem)
setpar_vel_model() (in module seisflows.tools.specfem)
setup() (seisflows.optimize.gradient.Gradient method)
(seisflows.optimize.LBFGS.LBFGS method)
(seisflows.preprocess.default.Default method)
(seisflows.preprocess.pyaflowa.Pyaflowa method)
(seisflows.seisflows.SeisFlows method)
(seisflows.solver.specfem.Specfem method)
(seisflows.solver.specfem2d.Specfem2D method)
(seisflows.solver.specfem3d.Specfem3D method)
(seisflows.system.singularity.Singularity method)
(seisflows.system.workstation.Workstation method)
(seisflows.workflow.forward.Forward method)
(seisflows.workflow.inversion.Inversion method)
(seisflows.workflow.test_flow.TestFlow method)
setup_optimization_vectors() (in module seisflows.tests.test_optimize)
setup_seisflows_working_directory() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method)
(seisflows.examples.sfexample2d.SFExample2D method)
setup_specfem2d_for_model_init() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method)
(seisflows.examples.sfexample2d.SFExample2D method)
setup_specfem2d_for_model_true() (seisflows.examples.ex1_homogeneous_halfspace.SFExample2D method)
(seisflows.examples.ex2_hh_w_pyatoa.SFPyatoaEx2D method)
(seisflows.examples.ex3_fwd_solver.SFFwdEx2D method)
(seisflows.examples.sfexample2d.SFExample2D method)
SFExample2D (class in seisflows.examples.ex1_homogeneous_halfspace)
(class in seisflows.examples.sfexample2d)
SFFwdEx2D (class in seisflows.examples.ex3_fwd_solver)
sfparser() (in module seisflows.seisflows)
SFPyatoaEx2D (class in seisflows.examples.ex2_hh_w_pyatoa)
Singularity (class in seisflows.system.singularity)
Slurm (class in seisflows.system.slurm)
smooth() (seisflows.solver.specfem.Specfem method)
(seisflows.solver.specfem2d.Specfem2D method)
(seisflows.solver.specfem3d_globe.Specfem3DGlobe method)
smooth_laplacian() (seisflows.solver.specfem3d_globe.Specfem3DGlobe method)
sortrows() (in module seisflows.tools.array)
source_name (seisflows.solver.specfem.Specfem property)
source_names (seisflows.solver.specfem.Specfem property)
Specfem (class in seisflows.solver.specfem)
Specfem2D (class in seisflows.solver.specfem2d)
Specfem3D (class in seisflows.solver.specfem3d)
Specfem3DGlobe (class in seisflows.solver.specfem3d_globe)
split() (seisflows.tools.model.Model method)
step_count (seisflows.optimize.gradient.Gradient property)
sub() (in module seisflows.tools.msg)
submit() (seisflows.seisflows.SeisFlows method)
(seisflows.system.cluster.Cluster method)
(seisflows.system.lsf.Lsf method)
(seisflows.system.singularity.Singularity method)
(seisflows.system.workstation.Workstation method)
submit_call_header (seisflows.system.chinook.Chinook property)
(seisflows.system.cluster.Cluster property)
(seisflows.system.frontera.Frontera property)
(seisflows.system.maui.Maui property)
(seisflows.system.slurm.Slurm property)
sum_residuals() (seisflows.preprocess.default.Default static method)
(seisflows.preprocess.pyaflowa.Pyaflowa method)
swap() (seisflows.seisflows.SeisFlows method)
T
task_list (seisflows.workflow.forward.Forward property)
(seisflows.workflow.inversion.Inversion property)
(seisflows.workflow.migration.Migration property)
(seisflows.workflow.test_flow.TestFlow property)
taskid() (seisflows.system.lsf.Lsf method)
test_bracket_line_search() (in module seisflows.tests.test_optimize)
test_call_seisflows() (in module seisflows.tests.test_seisflows)
test_cluster_run() (in module seisflows.tests.test_system)
test_cluster_run_single() (in module seisflows.tests.test_system)
test_cmd_configure() (in module seisflows.tests.test_seisflows)
test_cmd_par() (in module seisflows.tests.test_seisflows)
test_cmd_setup() (in module seisflows.tests.test_seisflows)
test_custom_import() (in module seisflows.tests.test_tools)
TEST_DATA (in module seisflows.tests.test_preprocess)
(in module seisflows.tests.test_solver)
test_default_initialize_adjoint_traces() (in module seisflows.tests.test_preprocess)
test_default_quantify_misfit() (in module seisflows.tests.test_preprocess)
test_default_read() (in module seisflows.tests.test_preprocess)
test_default_write() (in module seisflows.tests.test_preprocess)
TEST_DIR (in module seisflows.tests.test_seisflows)
(in module seisflows.tests.test_tools)
test_edited_parameter_file_name() (in module seisflows.tests.test_seisflows)
test_gradient_compute_direction() (in module seisflows.tests.test_optimize)
test_gradient_initialize_search() (in module seisflows.tests.test_optimize)
test_gradient_update_line_search() (in module seisflows.tests.test_optimize)
test_initialize_working_directory() (in module seisflows.tests.test_solver)
test_inversion_optimization_problem_with_gradient() (in module seisflows.tests.test_optimize)
test_inversion_optimization_problem_with_LBFGS() (in module seisflows.tests.test_optimize)
test_inversion_optimization_problem_with_NLCG() (in module seisflows.tests.test_optimize)
test_line_search_recover_from_failure() (in module seisflows.tests.test_optimize)
test_optimize_attempt_line_search_restart() (in module seisflows.tests.test_optimize)
test_optimize_checkpoint_reload() (in module seisflows.tests.test_optimize)
test_pyaflowa_check_fixed_windows() (in module seisflows.tests.test_preprocess)
test_pyaflowa_line_search() (in module seisflows.tests.test_preprocess)
test_pyaflowa_setup() (in module seisflows.tests.test_preprocess)
test_pyaflowa_setup_config() (in module seisflows.tests.test_preprocess)
test_run_binary() (in module seisflows.tests.test_solver)
TEST_SOLVER (in module seisflows.tests.test_preprocess)
test_source_names() (in module seisflows.tests.test_solver)
test_specfem_model() (in module seisflows.tests.test_tools)
test_system_print_hello_world() (seisflows.workflow.test_flow.TestFlow method)
test_system_wait_ten_seconds_then_fail() (seisflows.workflow.test_flow.TestFlow method)
test_workstation_run() (in module seisflows.tests.test_system)
test_workstation_run_single() (in module seisflows.tests.test_system)
TestFlow (class in seisflows.workflow.test_flow)
touch() (in module seisflows.tools.unix)
traveltime() (in module seisflows.plugins.preprocess.adjoint)
(in module seisflows.plugins.preprocess.misfit)
traveltime_inexact() (in module seisflows.plugins.preprocess.adjoint)
(in module seisflows.plugins.preprocess.misfit)
tv() (in module seisflows.tools.math)
U
uniquerows() (in module seisflows.tools.array)
update() (seisflows.tools.model.Model method)
update_line_search() (seisflows.optimize.gradient.Gradient method)
update_search_history() (seisflows.plugins.line_search.Bracket method)
(seisflows.plugins.line_search.bracket.Bracket method)
V
vector (seisflows.tools.model.Model property)
velocity() (in module seisflows.plugins.preprocess.adjoint)
(in module seisflows.plugins.preprocess.misfit)
W
warning (in module seisflows.plugins.preprocess.wavelets)
waveform() (in module seisflows.plugins.preprocess.adjoint)
(in module seisflows.plugins.preprocess.misfit)
which() (in module seisflows.tools.unix)
Workstation (class in seisflows.system.workstation)
write() (seisflows.preprocess.default.Default method)
(seisflows.tools.model.Model method)
write_fortran_binary() (in module seisflows.tools.specfem)
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